Lifeboat Foundation: Safeguarding Humanity
Toggle light / dark theme

Blog

Category: genetics

New genetic toolkit enables genome-wide analysis

Researchers at Cornell University have developed a powerful new genetic toolkit that allows scientists to study how genes function at the level of individual cells, an advance that could accelerate discoveries in development, neuroscience and disease.

The system builds on MAGIC (Mosaic Analysis by gRNA-Induced Crossing-over), a method originally created by the labs of Chun Han, associate professor in the Department of Molecular Biology and Genetics in the College of Agriculture and Life Sciences (CALS) and the Weill Institute for Cell and Molecular Biology. MAGIC uses CRISPR gene editing to generate individual mutant cells within otherwise normal tissue, enabling precise comparisons within a living organism.

In the new study, graduate researcher Yifan Shen expanded the approach into a genome-wide toolkit for Drosophila melanogaster, creating resources that work across all chromosomes and allow researchers to study genes that were previously difficult, or impossible, to analyze at single-cell resolution.

Endogenous aldehydes: A driver of clonal hematopoiesis from within?

Detoxification of endogenous aldehydes is critical for preserving genomic integrity in hematopoietic stem cells. In this issue, Kamimae-Lanning et al. show that excess formaldehyde can drive clonal hematopoiesis through attrition of blood-forming progenitors, accelerating neutral drift in the absence of known genetic drivers of positive selection.

Seed banks may complicate gene drives aimed at controlling weeds

Gene drives—a genetic engineering approach that quickly spreads specific genetic changes throughout a population, whether to kill it off or add a new trait—may have potential for controlling weeds. But so far, gene drives have primarily been studied in mosquitoes, and have yet to be deployed in the real world.

In a first-of-its-kind study, researchers modeled how a gene drive would proceed in plants. Their simulations suggest that a gene drive’s success may hinge on seed banks—underground reservoirs of seeds that can germinate years or even decades later. Without proper consideration, they found, these stored seeds can slow down or even doom the gene drive, because they continually reintroduce plants without the gene drive into the population.

Modeling studies like this one can help scientists design successful gene drives in plants and discover and mitigate potential problems before deployment in the wild, the researchers said.

Abstract: Genetic analysis of neurodegenerative diseases:

As part of the JCI’s Review Series on Neurodegeneration, Sonja W. Scholz and colleagues highlight key genomic technologies advancing diagnosis and research in neurodegeneration.

1Neurodegenerative Diseases Research Section, National Institute of Neurological Disorders and Stroke;

2Neurogenetics Branch, National Institute of Neurological Disorders and Stroke; and.

3Neuromuscular Diseases Research Section, National Institute on Aging, National Institutes of Health (NIH), Bethesda, Maryland, USA.

Zebrafish reveal new insights into the biology of autism

In recent decades, the zebrafish has become one of the most valuable model organisms in scientific research. For a variety of reasons, including their genetic similarities to humans, these tiny tropical fish have helped researchers unlock secrets to diseases ranging from muscular dystrophy to melanoma. Now, Yale researchers are hoping the zebrafish will do the same for autism spectrum disorder.

In a new study, a research team generated a database of 520 U.S. Food and Drug Administration (FDA)-approved drugs and their effects on basic larval zebrafish behaviors and then used the database to identify drug candidates that reverse disrupted behaviors in zebrafish carrying mutations in autism risk genes.

These drug candidates, the researchers say, might represent targets for people carrying mutations in specific autism risk genes.

New sensor could allow MRIs to see molecular-level changes

You’ve seen people sliding into the tube of a magnetic resonance imaging (MRI) machine on your favorite medical drama, or maybe you’ve been inside one yourself, waiting as the noisy scanner makes images of your brain, heart, bones, or other structures, which doctors use to identify injury or disease.

Since the 1970s, MRIs have been important diagnostic tools, combining a magnetic field and radio waves to produce snapshots of the body’s interior without using ionizing radiation, which can create health risks at higher doses. An MRI can typically capture changes in anatomy, but the molecular-level changes that could further aid understanding of disease have been beyond its reach.

Now, in a new article in Science Advances, University of California, Santa Barbara researchers report the invention of a modular, genetically encoded, protein-based sensor that enables MRI machines to visualize molecular activity inside cells—a development that could transform how scientists study cancer, neurodegeneration, and inflammation.

Scientists just found DNA “supergenes” that speed up evolution

Hidden within fish DNA are powerful genetic twists that may explain one of nature’s biggest mysteries: how new species form so quickly. In Lake Malawi, hundreds of cichlid fish species evolved at lightning speed, and scientists now think “flipped” sections of DNA—called chromosomal inversions—are the secret. These inversions lock together useful gene combinations, creating “supergenes” that help fish rapidly adapt to different environments, from deep waters to sandy shores.

Precision work prior to cell division: How enzymes optimize DNA structure

Before a cell can divide, it has to precisely duplicate its entire genetic information. However, the DNA in the cell exists as part of a DNA-protein complex known as chromatin. For this purpose, the DNA is wrapped around a core of histone proteins and tightly packed into so-called nucleosomes.

So that the genetic material can be reliably copied, the chromatin has to be temporarily reorganized in certain places and adopt a very specific architecture.

A team led by molecular biologists Professor Axel Imhof and Professor Christoph Kurat at the Biomedical Center (BMC) has now deciphered how the precise packaging of DNA is controlled at the beginning of cell division. The work is published in the journal Nature Communications.

Free software lets laptops simulate how aging evolves under selection

Why do some species live for only weeks while others survive for centuries? Researchers at the Leibniz Institute on Aging—Fritz Lipmann Institute (FLI) in Jena have developed AEGIS, a freely available software tool that enables scientists to simulate evolution on a standard computer and investigate how lifespan and aging evolve under different ecological pressures and genetic constraints.

Described in a new study published in PLoS Computational Biology, the platform represents years of development and marks an important milestone in the evolutionary biology of aging.

Aging is not a fixed property of life. Across the tree of life, species differ dramatically when they start to age, how fast they age, and how long they live. Understanding what evolutionary forces produced this diversity is one of the deepest open questions in biology.

/* */