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Category: biological

Tuning in to fluorescence to farm smarter: Monitoring plant light use saves indoor farm energy costs

Plant owners with a so-called green thumb often seem to have a more finely tuned sense of what their plants need than the rest of us. A new “smart lighting” system for indoor vertical farms grants this ability on a facility-wide scale, responsively meeting plants’ needs while reducing energy inefficiencies, clearing a path for indoor farms as an energy-efficient food security strategy.

The system was designed and tested in a study led by Professor of Plant Biology Tracy Lawson, who conducted the research at the University of Essex and is now a member of the Carl R. Woese Institute for Genomic Biology at the University of Illinois Urbana-Champaign. The work, published in Smart Agricultural Technology, emerged from her goal to help establish the viability of vertical farming for large-scale food production.

“One of the key aspects of [vertical farming], of course, is the energy cost associated with using LED lighting,” Lawson said. “So that’s where it all started, trying to save energy.”

Frontiers: Biological membranes are complex, heterogeneous, and dynamic systems that play roles in the compartmentalization and protection of cells from the environment

It is still a challenge to elucidate kinetics and real-time transport routes for molecules through biological membranes in live cells. Currently, by developing and employing super-resolution microscopy; increasing evidence indicates channels and transporter nano-organization and dynamics within membranes play an important role in these regulatory mechanisms. Here we review recent advances and discuss the major advantages and disadvantages of using super-resolution microscopy to investigate protein organization and transport within plasma membranes.

The mammalian plasma membrane (PM) is a complex assembly of lipids and proteins that separates the cell’s interior from the outside environment (Ingolfsson et al., 2014). The multiple collective processes that take place within membranes have a strong impact not only on the cellular behavior but also on its biochemistry. Understanding these processes poses a challenge due to the often complex and multiple interactions among membrane components (Stone et al., 2017). Moreover, the PM surface accommodates different types of lipid and protein clusters (Saka et al., 2014; Owen et al., 2012; Sezgin, 2017), even though the functional role of the clustering on the membrane surface has not yet been fully understood.

Scientists Believe Quantum Computers AreAbout to Cross a Major Line

We began this inquiry by looking at the mismatch between our computers and our brains. We realized that we were trying to run biological software on the wrong hardware. That era is ending. As we refine these quantum processors, we are finally building a mirror that is accurate enough to reflect the true nature of the mind. We are not just building faster computers. We are building a vessel that can hold the physics of thought.

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Timestamps:
0:00 Quantum Computers.
1:18 The Scale Problem.
4:40 The Thermodynamic Wall.
8:11 Quantum Mechanics in Wetware.
13:58 The \

Chemistry-powered ‘breathing’ membrane opens and closes tiny pores on its own

Ion channels are narrow passageways that play a pivotal role in many biological processes. To model how ions move through these tight spaces, pores need to be fabricated at very small length scales. The narrowest regions of ion channels can be just a few angstroms wide, about the size of individual atoms, making reproducible and precise fabrication a major challenge in modern nanotechnology.

In a study published in Nature Communications, researchers at The University of Osaka have addressed this challenge by using a miniature electrochemical reactor to create ultra-small pores approaching subnanometer dimensions.

In biological cells, ions flow in and out through channels in cell membranes. This ion flow is the basis for generating electrical signals, such as nerve impulses that trigger muscle contraction. The channels themselves are made of proteins and can have angstrom-wide narrow regions. Conformational changes of these proteins in response to external stimuli open and close the channels.

Lab-in-the-loop framework enables rapid evolution of complex multi-mutant proteins

The search space for protein engineering grows exponentially with complexity. A protein of just 100 amino acids has 20100 possible variants—more combinations than atoms in the observable universe. Traditional engineering methods might test hundreds of variants but limit exploration to narrow regions of the sequence space. Recent machine learning approaches enable broader searches through computational screening. However, these approaches still require tens of thousands of measurements, or 5–10 iterative rounds.

With the advent of these foundational protein models, the bottleneck for protein engineering swings back to the lab. For a single protein engineering campaign, researchers can only efficiently build and test hundreds of variants. What is the best way to choose those hundreds to most effectively uncover an evolved protein with substantially increased function? To address this problem, researchers have developed MULTI-evolve, a framework for efficient protein evolution that applies machine learning models trained on datasets of ~200 variants focused specifically on pairs of function-enhancing mutations.

Published in Science, this work represents Arc Institute’s first lab-in-the-loop framework for biological design, where computational prediction and experimental design are tightly integrated from the outset, reflecting a broader investment in AI-guided research.

Particles don’t always go with the flow (and why that matters)

It is commonly assumed that tiny particles just go with the flow as they make their way through soil, biological tissue, and other complex materials. But a team of Yale researchers led by Professor Amir Pahlavan shows that even gentle chemical gradients, such as a small change in salt concentration, can dramatically reshape how particles move through porous materials. Their results are published in Science Advances.

How small particles known as colloids, like fine clays, microbes, or engineered particles, move through porous materials such as soil, filters, and biological tissue can have significant and wide-ranging effects on everything from environmental cleanups to agriculture.

It’s long been known that chemical gradients—that is, gradual changes in the concentration of salt or other chemicals—can drive colloids to migrate directionally, a phenomenon known as diffusiophoresis. But it was often assumed that this effect would matter only when there was little or no flow, because phoretic speeds are typically orders of magnitude smaller than average flow speeds in porous media. Experiments set up in Pahlavan’s lab demonstrated a very different outcome.

Space Station Microbes Harvest Metals from Meteorites

Most microbes aboard the International Space Station can extract valuable metals like palladium from meteorite material in microgravity, showing potential for sustainable space resource mining.

How can microbes be used to help enhance human space exploration, specifically on the Moon and Mars? This is what a recent study published in npj Microgravity hopes to address as a team of scientists investigated how microbes could be used to harvest essential minerals from rocks that could be used to enhance sustainability efforts on long-term human missions to the Moon and Mars. This study has the potential to help scientists develop new methods for improving human spaceflight, which could substantially alleviate the need for relying on Earth for supplies.

For the study, the researchers sent meteorite and microorganism samples to the International Space Station (ISS) where astronauts conducted a series of experiments to ascertain how microorganisms could harvest essential minerals, specifically platinum and palladium, from the meteorite samples. Concurrently, the researchers also conducted the same experiments on Earth to compare the results under microgravity and terrestrial environments.

The goal of the study was to ascertain whether microorganisms could be used on future long-term space missions to harvest precious metals for construction of space habitats. In the end, the researchers and astronauts found that the microorganisms not only successfully extracted metals like palladium and platinum but also had minimal fungal residues typically that results from such processes. This lack of fungal residue was found to be more prevalent under microgravity conditions.

One of the astronauts stuck in space after Starliner malfunction to be on Cape Cod Feb. 20

She is an inspiration!

NASA astronaut Sunita “Suni” Williams, a Needham native with Falmouth ties, will speak about her experiences during a recent space mission at 7:30 p.m. Feb. 20 at the Marine Biological Laboratory’s Falmouth Forum, according to a community announcement.

The lecture, titled “So Much Space… So Much Time!,” will take place in the Cornelia Clapp Auditorium in Lillie Laboratory, 7 MBL St., Woods Hole. It is free and open to the public.

Williams and fellow astronaut Butch Wilmore remained aboard the International Space Station after thruster failures on their spacecraft. They returned to Earth on an alternate vehicle. Williams will share videos and personal accounts to highlight the rapid commercialization of space and the challenges it presents.

Chitosan-nickel biomaterial becomes stronger when wet, and could replace plastics

A new study led by the Institute for Bioengineering of Catalonia (IBEC) has unveiled the first biomaterial that is not only waterproof but actually becomes stronger in contact with water. The material is produced by the incorporation of nickel into the structure of chitosan, a chitinous polymer obtained from discarded shrimp shells. The development of this new biomaterial marks a departure from the plastic-age mindset of making materials that must isolate from their environment to perform well. Instead, it shows how sustainable materials can connect and leverage their environment, using their surrounding water to achieve mechanical performance that surpasses common plastics.

Plastics have become an integral part of modern society thanks to their durability and resistance to water. However, precisely these properties turn them into persistent disruptors of ecological cycles. As a result, unrecovered plastic is accumulating across ecosystems and becoming an increasingly ubiquitous component of global food chains, raising growing concerns about potential impacts on human health.

In an effort to address this challenge, the use of biomaterials as substitutes for conventional plastics has long been explored. However, their widespread adoption has been limited by a fundamental drawback: Most biological materials weaken when exposed to water. Traditionally, this vulnerability has forced engineers to rely on chemical modifications or protective coatings, thereby undermining the sustainability benefits of biomaterial-based solutions.

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