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Archive for the ‘biotech/medical’ category: Page 648

Apr 11, 2023

Macromolecular Information Transfer

Posted by in categories: biotech/medical, computing

Macromolecular information transfer can be defined as the process by which a coded monomer sequence is communicated from one macromolecule to another. In such a transfer process, the information sequence can be kept identical, transformed into a complementary sequence or even translated into a different molecular language. Such mechanisms are crucial in biology and take place in DNA→DNA replication, DNA→RNA transcription and RNA→protein translation. In fact, there would be no life on Earth without macromolecular information transfer. Mimicking such processes with synthetic macromolecules would also be of major scientific relevance because it would open up new avenues for technological applications (e.g. data storage and processing) but also for the creation of artificial life. In this important context, this minireview summarizes recent research about information transfer in synthetic oligomers and polymers. Medium-and long-term perspectives are also discussed.

Keywords: Artificial Translation; Molecular Replication; Precision Polymers; Sequence-Controlled Polymers; Template-Directed Synthesis.

© 2023 The Authors. Angewandte Chemie International Edition published by Wiley-VCH GmbH.

Apr 11, 2023

The origin of life: RNA and protein co-evolution on the ancient Earth

Posted by in categories: biotech/medical, chemistry, evolution, genetics

How life emerged from simple non-life chemicals on the ancient Earth is one of the greatest mysteries in biology. The gene expression system of extant life is based on the interdependence between multiple molecular species (DNA, RNA, and proteins). While DNA is mainly used as genetic material and proteins as functional molecules in modern biology, RNA serves as both genetic material and enzymes (ribozymes). Thus, the evolution of life may have begun with the birth of a ribozyme that replicated itself (the RNA world hypothesis), and proteins and DNA joined later. However, the complete self-replication of ribozymes from monomeric substrates has not yet been demonstrated experimentally, due to their limited activity and stability. In contrast, peptides are more chemically stable and are considered to have existed on the ancient Earth, leading to the hypothesis of RNA-peptide co-evolution from the very beginning. Our group and collaborators recently demonstrated that peptides with both hydrophobic and cationic moieties (e.g., KKVVVVVV) form β-amyloid aggregates that adsorb RNA and enhance RNA synthesis by an artificial RNA polymerase ribozyme and a simple peptide with only seven amino acid types (especially rich in valine and lysine) can fold into the ancient β-barrel conserved in various enzymes, including the core of cellular RNA polymerases. These findings, together with recent reports from other groups, suggest that simple prebiotic peptides could have supported the ancient RNA-based replication system, gradually folded into RNA-binding proteins, and eventually evolved into complex proteins like RNA polymerase.

Keywords: RNA world; ancient proteins; central dogma; origin of life; peptide.

© 2023 Japanese Society of Developmental Biologists.

Apr 11, 2023

A split ribozyme that links detection of a native RNA to orthogonal protein outputs

Posted by in categories: bioengineering, biotech/medical, chemistry

Individual RNA remains a challenging signal to synthetically transduce into different types of cellular information. Here, we describe Ribozyme-ENabled Detection of RNA (RENDR), a plug-and-play strategy that uses cellular transcripts to template the assembly of split ribozymes, triggering splicing reactions that generate orthogonal protein outputs. To identify split ribozymes that require templating for splicing, we use laboratory evolution to evaluate the activities of different split variants of the Tetrahymena thermophila ribozyme. The best design delivers a 93-fold dynamic range of splicing with RENDR controlling fluorescent protein production in response to an RNA input. We further resolve a thermodynamic model to guide RENDR design, show how input signals can be transduced into diverse outputs, demonstrate portability across different bacteria, and use RENDR to detect antibiotic-resistant bacteria. This work shows how transcriptional signals can be monitored in situ and converted into different types of biochemical information using RNA synthetic biology.

© 2023. The Author(s).

Conflict of interest statement.

Apr 11, 2023

RNA-Catalyzed Polymerization of Deoxyribose, Threose, and Arabinose Nucleic Acids

Posted by in categories: biotech/medical, evolution, genetics

An RNA-dependent RNA polymerase ribozyme that was highly optimized through in vitro evolution for the ability to copy a broad range of template sequences exhibits promiscuity toward other nucleic acids and nucleic acid analogues, including DNA, threose nucleic acid (TNA), and arabinose nucleic acid (ANA). By operating on various RNA templates, the ribozyme catalyzes multiple successive additions of DNA, TNA, or ANA monomers, although with reduced efficiency compared to RNA monomers. The ribozyme can also copy DNA or TNA templates to complementary RNAs, and to a lesser extent it can operate when both the template and product strands are composed of DNA, TNA, or ANA. These results suggest that polymerase ribozymes, which are thought to have replicated RNA genomes during the early history of life, could have transferred RNA-based genetic information to and from DNA, enabling the emergence of DNA genomes prior to the emergence of proteins. In addition, genetic systems based on nucleic acid-like molecules, which have been proposed as precursors or contemporaries of RNA-based life, could have been operated upon by a promiscuous polymerase ribozyme, thus enabling the evolutionary transition between early genetic systems.

Keywords: RNA world; XNA; origins of life; polymerase; reverse transcriptase; ribozyme.

Apr 11, 2023

Synthetic genetic polymers capable of heredity and evolution

Posted by in categories: biotech/medical, evolution, genetics

Genetic information storage and processing rely on just two polymers, DNA and RNA, yet whether their role reflects evolutionary history or fundamental functional constraints is currently unknown. With the use of polymerase evolution and design, we show that genetic information can be stored in and recovered from six alternative genetic polymers based on simple nucleic acid architectures not found in nature [xeno-nucleic acids (XNAs)]. We also select XNA aptamers, which bind their targets with high affinity and specificity, demonstrating that beyond heredity, specific XNAs have the capacity for Darwinian evolution and folding into defined structures. Thus, heredity and evolution, two hallmarks of life, are not limited to DNA and RNA but are likely to be emergent properties of polymers capable of information storage.

Apr 11, 2023

Shocking New Features on Artificial Womb

Posted by in categories: biotech/medical, robotics/AI

https://youtube.com/watch?v=kAl8CEnqJMg

The world’s first artificial womb facility, EctoLife, will be able to grow 30,000 babies a year. It’s based on over 50 years of groundbreaking scientific research conducted by researchers worldwide which we will cover in this video.

💃Want to own a Humanoid Robot: https://bit.ly/3PDgpsn.

Continue reading “Shocking New Features on Artificial Womb” »

Apr 11, 2023

Scientists Put Tardigrade DNA Into Human Stem Cells. They May Create Super Soldiers

Posted by in categories: biotech/medical, military

Here’s why water bears could help us withstand nuclear warfare.

Apr 11, 2023

The Radical Remission Project

Posted by in categories: biotech/medical, health

Welcome to the Radical Remission Project, the online community created by NY Times bestselling author Kelly A. Turner, PhD, author of Radical Remission & Radical Hope! We are dedicated to continuing research and creating community for survivors, patients, friends, family, and health professionals.

Apr 11, 2023

Florida fight over ‘baby boxes’ part of bigger culture war

Posted by in categories: biotech/medical, law

How does this work for the parent when they have a birth certificate but no baby to show for it, and no record of “disposing” of it?


FORT LAUDERDALE, Fla. (AP) — Safe Haven Baby Boxes and A Safe Haven for Newborns are two charities with similar names and the same goal: providing distressed mothers with a safe place to surrender their unwanted newborns instead of dumping them in trash cans or along roadsides.

But a fight between the two is brewing in the Florida Senate. An existing state law, supported and promoted by the Miami-based A Safe Haven, allows parents to surrender newborns to firefighters and hospital workers without giving their names. A new bill, supported by the Indiana-based Safe Haven Baby Boxes, would give fire stations and hospitals the option to install the group’s ventilated and climate-controlled boxes, where parents could drop off their babies without interacting with fire or hospital employees.

Continue reading “Florida fight over ‘baby boxes’ part of bigger culture war” »

Apr 11, 2023

Paul Thomas Anderson: Masterworks

Posted by in categories: biotech/medical, media & arts

An illustrated mid-career monograph exploring the 30-year creative journey of the 8-time Academy Award-nominated writer and director

Paul Thomas Anderson has been described as “one of American film’s modern masters” and “the foremost filmmaking talent of his generation.” Anderson’s films have received 25 Academy Award nominations, and he has worked closely with many of the most accomplished actors of our time, including Lesley Ann Manville, Julianne Moore, Daniel Day-Lewis, Joaquin Phoenix, and Philip Seymour Hoffman. In Paul Thomas Anderson: Masterworks, Anderson’s entire career—from Hard Eight (1996), Boogie Nights (1997), Magnolia (1999), Punch Drunk Love (2002), There Will Be Blood (2007), The Master (2012), Inherent Vice (2014), and Phantom Thread (2017) to his music videos for Radiohead to his early short films—is examined in illustrated detail for the first time.

Anderson’s influences, his style, and the recurring themes of alienation, reinvention, ambition, and destiny that course through his movies are analyzed and supplemented by firsthand interviews with Anderson’s closest collaborators—including producer JoAnne Sellar, actor Vicky Krieps, and composer Jonny Greenwood—and illuminated by film stills, archival photos, original illustrations, and an appropriately psychedelic design aesthetic. Masterworks is a tribute to the dreamers, drifters, and evil dentists who populate his world.

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